Transcript: lnc-HMG20A-2:2

Basic information

LNCipedia transcript ID: lnc-HMG20A-2:2 
LNCipedia gene ID: lnc-HMG20A-2
Location (hg19): chr15:77861312-77901023
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000561123.1; RP11-307C19.2-001; OTTHUMT00000419438.2; NONHSAT047447
Alternative gene names: ENSG00000259420.1; RP11-307C19.2; OTTHUMG00000172611.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.4903 non-coding 
CPAT coding probability 8.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMG20A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-2:2
4.0 lnc-HMG20A-2:2
4.1 lnc-HMG20A-2:2
5.0 lnc-HMG20A-2:2
5.1 lnc-PSTPIP1-5:2
5.2 lnc-HMG20A-2:2