Transcript: lnc-HMGA1-2:10

Basic information

LNCipedia transcript ID: lnc-HMGA1-2:10 
LNCipedia gene ID: lnc-HMGA1-2
Ensembl Gene ID: ENSG00000225339
Ensembl Transcript ID: ENST00000429998
Location (hg19): chr6:34247481-34254545
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7065 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429998.3
Alternative gene names: ENSG00000225339.3; RP11-513I15.6; AL354740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.0052 non-coding 
CPAT coding probability 6.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGA1-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HMGA1-2:10
4.1 lnc-HMGA1-2:10
5.0 lnc-HMGA1-2:10
5.1 lnc-PI16-71:7
5.2 lnc-HMGA1-2:10