Transcript: lnc-HMGA1-2:5

Basic information

LNCipedia transcript ID: lnc-HMGA1-2:5 
LNCipedia gene ID: lnc-HMGA1-2
Location (hg19): chr6:34248729-34252045
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 766 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT112127; ENST00000586726.1
Alternative gene names: ENSG00000225339.2; RP11-513I15.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1245 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGA1-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGA1-2:5
4.0 lnc-HMGA1-2:5
4.1 lnc-HMGA1-2:5
5.0 lnc-HMGA1-2:5
5.1 lnc-PI16-71:9
5.2 lnc-HMGA1-2:5