Transcript: lnc-HMGB2-15:7

Basic information

LNCipedia transcript ID: lnc-HMGB2-15:7 
LNCipedia gene ID: lnc-HMGB2-15
Location (hg19): chr4:174264471-174291337
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 476 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009166; NONHSAT099234
Alternative gene names: XLOC_004165; linc-HMGB2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.9063 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-15:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCRG1-1:3
3.1 lnc-SCRG1-1:3
4.0 lnc-HMGB2-15:7
4.1 lnc-HMGB2-15:7
5.0 lnc-HMGB2-15:7
5.1 lnc-HPGD-26:12
5.2 lnc-HMGB2-15:7