Transcript: lnc-HMGB2-2:1

Basic information

LNCipedia transcript ID: lnc-HMGB2-2:1 
LNCipedia gene ID: lnc-HMGB2-2
Location (hg19): chr4:174183023-174185840
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1073 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4
Alternative transcript names: ENST00000511941; NONHSAT099225
Alternative gene names: ENSG00000249097


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.3327 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGB2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGB2-1:1
3.1 lnc-HMGB2-2:1
4.0 lnc-HMGB2-2:1
4.1 lnc-HMGB2-2:1
5.0 lnc-HMGB2-2:1
5.1 lnc-HPGD-29:1
5.2 lnc-HMGB2-2:1