Transcript: lnc-HMGCLL1-1:1

Basic information

LNCipedia transcript ID: lnc-HMGCLL1-1:1 
LNCipedia gene ID: lnc-HMGCLL1-1
Ensembl Gene ID: ENSG00000224984
Ensembl Transcript ID: ENST00000425089
Location (hg19): chr6:54704916-54705653
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011510; ENST00000425089.1; RP11-524H19.2-001; OTTHUMT00000040993.1; NONHSAT113228
Alternative gene names: XLOC_005749; linc-KLHL31-2; ENSG00000224984.1; RP11-524H19.2; OTTHUMG00000014898.1; AL512363.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.5104 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGCLL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMGCLL1-1:1
3.1 lnc-HMGCLL1-1:1
4.0 lnc-HMGCLL1-1:1
4.1 lnc-HMGCLL1-1:1
5.0 lnc-HMGCLL1-1:1
5.1 lnc-GSTA5-24:4
5.2 lnc-HMGCLL1-1:1