Transcript: lnc-HMGCR-4:1

Basic information

LNCipedia transcript ID: lnc-HMGCR-4:1 
LNCipedia gene ID: lnc-HMGCR-4
Location (hg19): chr5:74532889-74533792
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 904 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000076297.1|ENCT00000345939.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -136.1646 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGCR-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HMGCR-4:1
5.0 lnc-HMGCR-4:1
5.1 lnc-MAP1B-42:1
5.2 lnc-HMGCR-4:1