Transcript: lnc-HMGCS2-1:1

Basic information

LNCipedia transcript ID: lnc-HMGCS2-1:1 
LNCipedia gene ID: lnc-HMGCS2-1
Location (hg19): chr1:120286506-120286835
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 330 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000073556.1|HBMT00000071957.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 108.0719 coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HMGCS2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HMGCS2-1:1
5.0 lnc-HMGCS2-1:1
5.1 lnc-REG4-1:2
5.2 lnc-HMGCS2-1:1