Transcript: lnc-HMGN5-5:1

Basic information

LNCipedia transcript ID: lnc-HMGN5-5:1 
LNCipedia gene ID: lnc-HMGN5-5
Location (hg19): chrX:81676255-81676492
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 238 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: uc_476_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.816 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMGN5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGN5-5:1
4.0 lnc-HMGN5-5:1
4.1 lnc-HMGN5-5:1
5.0 lnc-HMGN5-5:1
5.1 lnc-PHKA1-44:1
5.2 lnc-HMGN5-5:1