Transcript: lnc-HMHB1-2:2

Basic information

LNCipedia transcript ID: lnc-HMHB1-2:2 
LNCipedia gene ID: lnc-HMHB1-2
Ensembl Gene ID: ENSG00000251205
Ensembl Transcript ID: ENST00000514942
Location (hg19): chr5:142938784-142942113
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514942; ENST00000514942.2; CTD-2050E21.2-001; OTTHUMT00000371895.2; NONHSAT104354
Alternative gene names: ENSG00000251205; CTD-2050E21.2; ENSG00000251205.2; OTTHUMG00000163170.2; AC016598.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.6121 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMHB1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HMHB1-1:2
3.1 lnc-HMHB1-2:2
4.0 lnc-HMHB1-2:2
4.1 lnc-HMHB1-2:2
5.0 lnc-HMHB1-2:2
5.1 lnc-PCDHGA7-32:3
5.2 lnc-HMHB1-2:2