Transcript: lnc-HNF1A-1:3

Basic information

LNCipedia transcript ID: lnc-HNF1A-1:3 
LNCipedia gene ID: lnc-HNF1A-1
Location (hg19): chr12:121342728-121345743
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 370 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021222; NONHSAT031254
Alternative gene names: XLOC_009911; linc-HNF1A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.0119 non-coding 
CPAT coding probability 6.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNF1A-1:3 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HNF1A-1:3
3.1 lnc-HNF1A-1:3
4.0 lnc-HNF1A-1:3
4.1 lnc-HNF1A-1:3
5.0 lnc-HNF1A-1:3
5.1 lnc-COX6A1-12:7
5.2 lnc-HNF1A-1:3