Transcript: lnc-HNF1A-1:6

Basic information

LNCipedia transcript ID: lnc-HNF1A-1:6 
LNCipedia gene ID: lnc-HNF1A-1
Location (hg19): chr12:121342262-121347084
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1941 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010633.1|HBMT00000318271.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.2289 non-coding 
CPAT coding probability 11.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HNF1A-1:6 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HNF1A-1:6
5.0 lnc-HNF1A-1:6
5.1 lnc-COX6A1-12:2
5.2 lnc-HNF1A-1:6