Transcript: lnc-HOOK1-1:6

Basic information

LNCipedia transcript ID: lnc-HOOK1-1:6 
LNCipedia gene ID: lnc-HOOK1-1
RefSeq ID: NR_110627
Location (hg19): chr1:60238467-60254504
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 531 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110627.1
Alternative gene names: LOC101926944


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.1178 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOOK1-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-USP1-27:5
5.1 lnc-USP1-27:5
5.2 lnc-HOOK1-1:6