Transcript: lnc-HOOK1-3:1

Basic information

LNCipedia transcript ID: lnc-HOOK1-3:1 
LNCipedia gene ID: lnc-HOOK1-3
Location (hg19): chr1:60708563-60724248
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 218 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000966; NONHSAT003584
Alternative gene names: XLOC_000225; linc-NFIA-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -261.9236 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOOK1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOOK1-3:1
3.1 lnc-HOOK1-3:1
4.0 lnc-HOOK1-3:1
4.1 lnc-HOOK1-3:1
5.0 lnc-HOOK1-3:1
5.1 lnc-USP1-22:1
5.2 lnc-HOOK1-3:1