Transcript: lnc-HOXA10-1:4

Basic information

LNCipedia transcript ID: lnc-HOXA10-1:4 
LNCipedia gene ID: lnc-HOXA10-1
Location (hg19): chr7:27203301-27209356
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 521 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000489695; NONHSAT119692
Alternative gene names: ENSG00000257667; RP1-170O19.21


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -407.5881 non-coding 
CPAT coding probability 6.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXA10-1:4 no no no no

Available literature

  1. Jalali (2013), Systematic transcriptome wide analysis of lncRNA-miRNA interactions., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-170O19.20.1-1:3
3.1 lnc-HOXA9-1:3
4.0 lnc-HOXA9-1:3
4.1 lnc-HOXA9-1:3
5.0 lnc-HOXA9-1:3
5.1 lnc-HOXA7-3:4
5.2 lnc-HOXA10-1:4