Transcript: lnc-HOXA13-1:1

Basic information

LNCipedia transcript ID: lnc-HOXA13-1:1 
LNCipedia gene ID: lnc-HOXA13-1
Location (hg19): chr7:27226866-27232305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4899 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013751; NONHSAT119708
Alternative gene names: XLOC_006390; linc-HOXA11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.2011 non-coding 
CPAT coding probability 14.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXA13-1:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXA13-1:1
3.1 lnc-HOXA13-1:1
4.0 lnc-HOXA13-1:1
4.1 lnc-HOXA13-1:1
5.0 lnc-HOXA13-1:1
5.1 lnc-HOXA7-4:1
5.2 lnc-HOXA13-1:1