Transcript: lnc-HOXA3-1:8

Basic information

LNCipedia transcript ID: lnc-HOXA3-1:8 
LNCipedia gene ID: lnc-HOXA3-1
Location (hg19): chr7:27150310-27179844
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 598 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT119671
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.3778 non-coding 
CPAT coding probability 18.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXA3-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXA4-1:4
4.0 lnc-HOXA6-1:4
4.1 lnc-HOXA6-1:4
5.0 lnc-HOXA6-1:4
5.1 lnc-HOXA3-1:4
5.2 lnc-HOXA3-1:8