Transcript: lnc-HOXB8-1:16

Basic information

LNCipedia transcript ID: lnc-HOXB8-1:16 
LNCipedia gene ID: lnc-HOXB8-1
Location (hg19): chr17:46694457-46699890
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2194 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT054454
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.8772 non-coding 
CPAT coding probability 14.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXB8-1:16 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXB9-1:1
4.0 lnc-HOXB9-1:1
4.1 lnc-HOXB8-1:16
5.0 lnc-HOXB8-1:16
5.1 lnc-ZNF652-24:15
5.2 lnc-HOXB8-1:16