Transcript: lnc-HOXC4-4:5

Basic information

LNCipedia transcript ID: lnc-HOXC4-4:5 
LNCipedia gene ID: lnc-HOXC4-4
Location (hg19): chr12:54519855-54526626
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1395 bp
Exons: 2
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026656
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -288.2327 non-coding 
CPAT coding probability 33.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HOXC4-4:5 yes no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer
  2. Zhao (2015), Systematic identification and characterization of long intergenic non-coding RNAs in fetal porcine skeletal muscle development., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HOXC4-3:2
4.0 lnc-HOXC4-4:5
4.1 lnc-HOXC4-4:5
5.0 lnc-HOXC4-4:5
5.1 lnc-PDE1B-18:1
5.2 lnc-HOXC4-4:5