Transcript: lnc-HOXC4-5:1

Basic information

LNCipedia transcript ID: lnc-HOXC4-5:1 
LNCipedia gene ID: lnc-HOXC4-5
Ensembl Gene ID: ENSG00000248576
Ensembl Transcript ID: ENST00000504210
Location (hg19): chr12:54556923-54562379
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020234; ENST00000504210.1; RP11-834C11.8-001; OTTHUMT00000358930.1; NONHSAT028585
Alternative gene names: XLOC_009766; linc-HNRNPA1-2; ENSG00000248576.1; RP11-834C11.8; OTTHUMG00000160022.1; AC023794.1; AC023794.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.3837 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXC4-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HOXC4-5:1
3.1 lnc-HOXC4-5:1
4.0 lnc-HOXC4-5:1
4.1 lnc-HOXC4-5:1
5.0 lnc-HOXC4-5:1
5.1 lnc-PDE1B-17:1
5.2 lnc-HOXC4-5:1