Transcript: lnc-HOXD13-3:6

Basic information

LNCipedia transcript ID: lnc-HOXD13-3:6 
LNCipedia gene ID: lnc-HOXD13-3
Location (hg19): chr2:176867134-176882131
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 14998 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000045621.1|ENCT00000232315.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 29.3222 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HOXD13-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HOXD13-3:6
5.0 lnc-HOXD13-3:6
5.1 lnc-UBR3-73:6
5.2 lnc-HOXD13-3:6