Transcript: lnc-HPCAL1-1:11

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:11 
LNCipedia gene ID: lnc-HPCAL1-1
Location (hg19): chr2:10592385-10597076
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1929 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004696; NONHSAT069116
Alternative gene names: XLOC_001342; linc-ATP6V1C2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.0908 non-coding 
CPAT coding probability 15.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPCAL1-1:11
3.1 lnc-HPCAL1-1:11
4.0 lnc-HPCAL1-1:11
4.1 lnc-HPCAL1-1:11
5.0 lnc-HPCAL1-1:11
5.1 lnc-SNX17-194:19
5.2 lnc-HPCAL1-1:11