Transcript: lnc-HPN-1:3

Basic information

LNCipedia transcript ID: lnc-HPN-1:3 
LNCipedia gene ID: lnc-HPN-1
Location (hg19): chr19:35527238-35527964
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 405 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT065793; ENST00000601692.1
Alternative gene names: ENSG00000267874.1; CTD-2527I21.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.1021 non-coding 
CPAT coding probability 5.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPN-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HPN-1:1
4.0 lnc-SCN1B-1:3
4.1 lnc-SCN1B-1:3
5.0 lnc-SCN1B-1:3
5.1 lnc-GPR42-29:1
5.2 lnc-HPN-1:3