Transcript: lnc-HPS4-8:3

Basic information

LNCipedia transcript ID: lnc-HPS4-8:3 
LNCipedia gene ID: lnc-HPS4-8
Location (hg19): chr22:26398629-26403704
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4032 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2262_chr22:26398628-26403704_76bGuttman_hES
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.4975 non-coding 
CPAT coding probability 20.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPS4-8:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HPS4-8:3
4.0 lnc-HPS4-8:3
4.1 lnc-HPS4-8:3
5.0 lnc-HPS4-8:3
5.1 lnc-PITPNB-45:3
5.2 lnc-HPS4-8:3