Transcript: lnc-HPS6-4:1

Basic information

LNCipedia transcript ID: lnc-HPS6-4:1 
LNCipedia gene ID: lnc-HPS6-4
Location (hg19): chr10:103816131-103816356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 226 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000116243.1|HBMT00000152473.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -186.2141 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPS6-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HPS6-4:1
5.0 lnc-HPS6-4:1
5.1 lnc-SMC3-107:1
5.2 lnc-HPS6-4:1