Transcript: lnc-HRH4-6:1

Basic information

LNCipedia transcript ID: lnc-HRH4-6:1 
LNCipedia gene ID: lnc-HRH4-6
Ensembl Gene ID: ENSG00000266573
Ensembl Transcript ID: ENST00000577354
RefSeq ID: NR_134604
Location (hg19): chr18:22305745-22346609
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000577354.1; RP11-449D8.5-001; OTTHUMT00000446764.1; NONHSAT058715; ENST00000577354.5; NR_134604.1
Alternative gene names: ENSG00000266573.1; RP11-449D8.5; OTTHUMG00000179506.1; ENSG00000266573.5; AC018697.1; LOC105372028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.5514 non-coding 
CPAT coding probability 7.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HRH4-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HRH4-6:1
4.0 lnc-HRH4-6:1
4.1 lnc-HRH4-6:1
5.0 lnc-HRH4-6:1
5.1 lnc-RIOK3-41:1
5.2 lnc-HRH4-6:1