Transcript: lnc-HRH4-6:2

Basic information

LNCipedia transcript ID: lnc-HRH4-6:2 
LNCipedia gene ID: lnc-HRH4-6
Ensembl Gene ID: ENSG00000266573
Ensembl Transcript ID: ENST00000582650
Location (hg19): chr18:22305817-22509040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582650.1; RP11-449D8.5-002; OTTHUMT00000446765.1; NONHSAT058716; ENST00000582650.5
Alternative gene names: ENSG00000266573.1; RP11-449D8.5; OTTHUMG00000179506.1; ENSG00000266573.5; AC018697.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.0795 non-coding 
CPAT coding probability 5.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HRH4-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HRH4-6:2
4.0 lnc-HRH4-6:2
4.1 lnc-HRH4-6:2
5.0 lnc-HRH4-6:2
5.1 lnc-RIOK3-41:2
5.2 lnc-HRH4-6:2