Transcript: lnc-HS3ST5-6:3

Basic information

LNCipedia transcript ID: lnc-HS3ST5-6:3 
LNCipedia gene ID: lnc-HS3ST5-6
Location (hg19): chr6:114279591-114292300
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 733 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT114582
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 753.3378 coding 
CPAT coding probability 21.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HS3ST5-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST5-6:3
4.0 lnc-HS3ST5-6:3
4.1 lnc-HS3ST5-6:3
5.0 lnc-HS3ST5-6:3
5.1 lnc-LAMA4-31:2
5.2 lnc-HS3ST5-6:3