Transcript: lnc-HSFX3-2:1

Basic information

LNCipedia transcript ID: lnc-HSFX3-2:1 
LNCipedia gene ID: lnc-HSFX3-2
Location (hg19): chrX:148629755-148631380
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1167 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000431993.1; RP5-937E21.8-001; OTTHUMT00000058708.1
Alternative gene names: ENSG00000225261.1; RP5-937E21.8; OTTHUMG00000022623.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 111.4044 coding 
CPAT coding probability 99.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-HSFX3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IDS-2:1
4.0 lnc-IDS-2:1
4.1 lnc-IDS-2:1
5.0 lnc-IDS-2:1
5.1 lnc-CTAG1B-68:1
5.2 lnc-HSFX3-2:1