Transcript: lnc-HSP90B1-4:1

Basic information

LNCipedia transcript ID: lnc-HSP90B1-4:1 
LNCipedia gene ID: lnc-HSP90B1-4
Location (hg19): chr12:104319269-104320074
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000010229.1|FTMT24700032110.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.3794 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSP90B1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HSP90B1-4:1
5.0 lnc-HSP90B1-4:1
5.1 lnc-HCFC2-7:1
5.2 lnc-HSP90B1-4:1