Transcript: lnc-HSPA12A-1:14

Basic information

LNCipedia transcript ID: lnc-HSPA12A-1:14 
LNCipedia gene ID: lnc-HSPA12A-1
Location (hg19): chr10:118588272-118609212
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4897 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000453491.2
Alternative gene names: ENSG00000225302.2; RP11-539I5.1; AC023283.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.6883 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPA12A-1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-KIAA1598-1:5
4.1 lnc-KIAA1598-1:5
5.0 lnc-KIAA1598-1:5
5.1 lnc-NSMCE4A-89:13
5.2 lnc-HSPA12A-1:14