Transcript: lnc-HSPA4-4:1

Basic information

LNCipedia transcript ID: lnc-HSPA4-4:1 
LNCipedia gene ID: lnc-HSPA4-4
Ensembl Gene ID: ENSG00000250409
Ensembl Transcript ID: ENST00000507964
Location (hg19): chr5:132723465-132724241
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 275 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507964.1; CTB-3M24.3-001; OTTHUMT00000370207.1; NONHSAT103816
Alternative gene names: ENSG00000250409.1; CTB-3M24.3; OTTHUMG00000162725.1; AC010608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.3532 non-coding 
CPAT coding probability 2.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPA4-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HSPA4-4:1
4.0 lnc-HSPA4-4:1
4.1 lnc-HSPA4-4:1
5.0 lnc-HSPA4-4:1
5.1 lnc-PDLIM4-36:1
5.2 lnc-HSPA4-4:1