Transcript: lnc-HTR1B-1:6

Basic information

LNCipedia transcript ID: lnc-HTR1B-1:6 
LNCipedia gene ID: lnc-HTR1B-1
Location (hg19): chr6:77853285-78078862
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8746 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000088944.1|ENCT00000387173.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.0984 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HTR1B-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HTR1B-1:6
5.0 lnc-HTR1B-1:6
5.1 lnc-CEP162-54:5
5.2 lnc-HTR1B-1:6