Transcript: lnc-HTR1B-2:2

Basic information

LNCipedia transcript ID: lnc-HTR1B-2:2 
LNCipedia gene ID: lnc-HTR1B-2
Ensembl Gene ID: ENSG00000230309
Ensembl Transcript ID: ENST00000449463
Location (hg19): chr6:79314184-79315753
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 387 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011521; ENST00000449463; ENST00000449463.1; RP3-390M24.1-001; OTTHUMT00000041294.1; NONHSAT113670
Alternative gene names: XLOC_005770; linc-HTR1B-2; ENSG00000230309; RP3-390M24.1; ENSG00000230309.1; OTTHUMG00000015068.1; AL121718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8184 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HTR1B-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHIP-2:1
3.1 lnc-PHIP-2:1
4.0 lnc-PHIP-2:1
4.1 lnc-HTR1B-2:2
5.0 lnc-HTR1B-2:2
5.1 lnc-CEP162-52:1
5.2 lnc-HTR1B-2:2