Transcript: lnc-HTR2C-5:1

Basic information

LNCipedia transcript ID: lnc-HTR2C-5:1 
LNCipedia gene ID: lnc-HTR2C-5
Location (hg19): chrX:113199248-113207680
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5247 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT138225; FPKM1_group_35074_transcript_7
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6338 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HTR2C-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HTR2C-5:1
4.0 lnc-HTR2C-5:1
4.1 lnc-HTR2C-5:1
5.0 lnc-HTR2C-5:1
5.1 lnc-TEX13C-164:1
5.2 lnc-HTR2C-5:1