Transcript: lnc-HTR4-1:2

Basic information

LNCipedia transcript ID: lnc-HTR4-1:2 
LNCipedia gene ID: lnc-HTR4-1
Ensembl Gene ID: ENSG00000247199
Ensembl Transcript ID: ENST00000501695
Location (hg19): chr5:147647870-147763346
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2033 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501695; ENST00000501695.3; RP11-373N22.3-001; OTTHUMT00000374175.2; NONHSAT104441
Alternative gene names: ENSG00000247199; RP11-373N22.3; ENSG00000247199.3; OTTHUMG00000163558.2; AC091948.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.9938 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HTR4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HTR4-1:2
3.1 lnc-HTR4-1:2
4.0 lnc-HTR4-1:2
4.1 lnc-HTR4-1:2
5.0 lnc-HTR4-1:2
5.1 lnc-FAXDC2-92:8
5.2 lnc-HTR4-1:2