Transcript: lnc-IBTK-3:1

Basic information

LNCipedia transcript ID: lnc-IBTK-3:1 
LNCipedia gene ID: lnc-IBTK-3
Ensembl Gene ID: ENSG00000226089
Ensembl Transcript ID: ENST00000570612
Location (hg19): chr6:82237084-82244632
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 319 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570612.1; RP1-300G12.2-003; OTTHUMT00000438006.1; NONHSAT113741
Alternative gene names: ENSG00000226089.2; RP1-300G12.2; OTTHUMG00000015096.2; AL122017.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.9546 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IBTK-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IBTK-3:1
4.0 lnc-IBTK-3:1
4.1 lnc-IBTK-3:1
5.0 lnc-IBTK-3:1
5.1 lnc-CEP162-38:1
5.2 lnc-IBTK-3:1