Transcript: lnc-ICA1-3:1

Basic information

LNCipedia transcript ID: lnc-ICA1-3:1 
LNCipedia gene ID: lnc-ICA1-3
Ensembl Gene ID: ENSG00000278254
Ensembl Transcript ID: ENST00000613936
Location (hg19): chr7:9136901-9229395
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 875 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568021.1; RP4-668E10.1-001; OTTHUMT00000422246.1; NONHSAT119163; ENST00000613936.4
Alternative gene names: ENSG00000260543.1; RP4-668E10.1; OTTHUMG00000173139.1; ENSG00000278254.4; RP4-668E10.4; AC004852.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.8765 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICA1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ICA1-3:1
4.0 lnc-ICA1-3:1
4.1 lnc-ICA1-3:1
5.0 lnc-ICA1-3:1
5.1 lnc-THSD7A-30:7
5.2 lnc-ICA1-3:1