Transcript: lnc-ICA1-3:6

Basic information

LNCipedia transcript ID: lnc-ICA1-3:6 
LNCipedia gene ID: lnc-ICA1-3
Location (hg19): chr7:9119830-9229415
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4575 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000095055.1|FTMT22500027917.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.4675 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICA1-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ICA1-3:6
5.0 lnc-ICA1-3:6
5.1 lnc-THSD7A-30:5
5.2 lnc-ICA1-3:6