Transcript: lnc-ICOSLG-1:1

Basic information

LNCipedia transcript ID: lnc-ICOSLG-1:1 
LNCipedia gene ID: lnc-ICOSLG-1
Location (hg19): chr21:45626408-45627282
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 463 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00028955; ENST00000423967; ENST00000423967.1; AP001058.3-001; OTTHUMT00000195823.1; NONHSAT082497
Alternative gene names: XLOC_014115; linc-CSTB-8; ENSG00000232698; AP001058.3; ENSG00000232698.1; OTTHUMG00000086915.1; AP001058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.1482 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICOSLG-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICOSLG-1:1
3.1 lnc-ICOSLG-1:1
4.0 lnc-ICOSLG-1:1
4.1 lnc-ICOSLG-1:1
5.0 lnc-ICOSLG-1:1
5.1 lnc-POFUT2-28:1
5.2 lnc-ICOSLG-1:1