Transcript: lnc-IDS-3:1

Basic information

LNCipedia transcript ID: lnc-IDS-3:1 
LNCipedia gene ID: lnc-IDS-3
Ensembl Gene ID: ENSG00000237741
Ensembl Transcript ID: ENST00000456981
Location (hg19): chrX:147579633-147582135
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017100; ENST00000456981.1; AC002368.4-001; OTTHUMT00000058672.1; NONHSAT138918
Alternative gene names: XLOC_008254; linc-CXorf51-1; ENSG00000237741.1; AC002368.4; OTTHUMG00000022612.1; AC002368.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.6144 non-coding 
CPAT coding probability 33.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IDS-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IDS-1:1
3.1 lnc-IDS-3:1
4.0 lnc-IDS-3:1
4.1 lnc-IDS-3:1
5.0 lnc-IDS-3:1
5.1 lnc-CTAG1B-75:1
5.2 lnc-IDS-3:1