Transcript: lnc-IER3-15:15

Basic information

LNCipedia transcript ID: lnc-IER3-15:15 
LNCipedia gene ID: lnc-IER3-15
Location (hg19): chr6:30780643-30798405
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2021 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000214894.2|ENST00000399196.1
Alternative gene names: bQB230F21.2; FLJ40693; bQB10J12.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.5771 non-coding 
CPAT coding probability 28.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IER3-15:15 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  2. Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00243:11
5.0 LINC00243:11
5.1 lnc-SFTA2-15:15
5.2 lnc-IER3-15:15