Transcript: lnc-IER3-15:6
Basic information
LNCipedia transcript ID: lnc-IER3-15:6
HGNC Gene Symbol: lnc-IER3-15
HGNC Full Gene Name:
long intergenic non-protein coding RNA 2570
Ensembl Gene ID:
ENSG00000237923
Ensembl Transcript ID:
ENST00000442852
Location (hg19): chr6:30807303-30815936
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 799 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011480; ENST00000442852; ENST00000442852.1; XXbac-BPG27H4.8-001; OTTHUMT00000257578.1; NONHSAT108685
Alternative gene names: XLOC_005675; linc-IER3; ENSG00000237923; XXbac-BPG27H4.8; ENSG00000237923.1; OTTHUMG00000133550.1; bQB230F21.2; FLJ40693; bQB10J12.2; AL662797.1; LINC02570
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-IER3-15:6 | no | no | no | no |
Available literature
- Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
- Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-SFTA2-1:1 |
| 3.1 | lnc-SFTA2-12:1 |
| 4.0 | lnc-SFTA2-12:1 |
| 4.1 | LINC00243:8 |
| 5.0 | LINC00243:8 |
| 5.1 | lnc-SFTA2-15:6 |
| 5.2 | lnc-IER3-15:6 |