Transcript: lnc-IER3-15:7

Basic information

LNCipedia transcript ID: lnc-IER3-15:7 
LNCipedia gene ID: lnc-IER3-15
RefSeq ID: NR_134610
Location (hg19): chr6:30807306-30815936
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 796 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_134610.1
Alternative gene names: LOC105375014


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -112.9892 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IER3-15:7 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  2. Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SFTA2-15:7
5.1 lnc-SFTA2-15:7
5.2 lnc-IER3-15:7