Transcript: lnc-IER3-15:8

Basic information

LNCipedia transcript ID: lnc-IER3-15:8 
LNCipedia gene ID: lnc-IER3-15
Location (hg19): chr6:30807638-30814944
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012141; NONHSAT108686
Alternative gene names: XLOC_005675; linc-IER3; bQB230F21.2; FLJ40693; bQB10J12.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -281.9807 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IER3-15:8 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  2. Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SFTA2-1:2
3.1 lnc-SFTA2-12:2
4.0 lnc-SFTA2-12:2
4.1 LINC00243:9
5.0 LINC00243:9
5.1 lnc-SFTA2-15:8
5.2 lnc-IER3-15:8