Transcript: lnc-IFIT2-1:1

Basic information

LNCipedia transcript ID: lnc-IFIT2-1:1 
LNCipedia gene ID: lnc-IFIT2-1
Location (hg19): chr10:91043394-91051748
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 632 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000444849.2; RP11-149I23.3-002; OTTHUMT00000049298.2; NONHSAT015504
Alternative gene names: ENSG00000232110.2; RP11-149I23.3; OTTHUMG00000018710.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.503 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFIT2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFIT2-1:1
4.0 lnc-IFIT2-1:1
4.1 lnc-IFIT2-1:1
5.0 lnc-IFIT2-1:1
5.1 lnc-SMC3-284:1
5.2 lnc-IFIT2-1:1