Transcript: lnc-IGFBP4-1:2

Basic information

LNCipedia transcript ID: lnc-IGFBP4-1:2 
LNCipedia gene ID: lnc-IGFBP4-1
Ensembl Gene ID: ENSG00000266088
Ensembl Transcript ID: ENST00000578280
Location (hg19): chr17:38673278-38683254
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1014 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578280.1; RP5-1028K7.2-001; OTTHUMT00000447524.1; NONHSAT053553; ENST00000578280.5
Alternative gene names: ENSG00000266088.1; RP5-1028K7.2; OTTHUMG00000179655.1; ENSG00000266088.5; AC004585.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.5982 non-coding 
CPAT coding probability 23.94% non-coding 
Bazzini small ORFs 1 coding 
seqAAMNRHHTEVFVRKKVDAGILSSNRSLPVSAD
covF1Prop0.107142857
orfFrame7.215204481

In stringent set: no

Locus conservation

Locus conservation?
lnc-IGFBP4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IGFBP4-1:2
4.0 lnc-IGFBP4-1:2
4.1 lnc-IGFBP4-1:2
5.0 lnc-IGFBP4-1:2
5.1 lnc-THRA-32:3
5.2 lnc-IGFBP4-1:2