Transcript: lnc-IGFBP7-8:1

Basic information

LNCipedia transcript ID: lnc-IGFBP7-8:1 
LNCipedia gene ID: lnc-IGFBP7-8
Ensembl Gene ID: ENSG00000249892
Ensembl Transcript ID: ENST00000511603
Location (hg19): chr4:60633534-60657832
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 760 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007772; ENST00000511603; ENST00000511603.1; RP11-525J21.1-001; OTTHUMT00000365891.2; NONHSAT096592
Alternative gene names: XLOC_003965; linc-IGFBP7-2; ENSG00000249892; RP11-525J21.1; ENSG00000249892.1; OTTHUMG00000161731.2; AC093857.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4972 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP7-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP7-7:1
3.1 lnc-IGFBP7-8:1
4.0 lnc-IGFBP7-8:1
4.1 lnc-IGFBP7-8:1
5.0 lnc-IGFBP7-8:1
5.1 lnc-CENPC-65:1
5.2 lnc-IGFBP7-8:1