Transcript: lnc-IGSF6-1:1

Basic information

LNCipedia transcript ID: lnc-IGSF6-1:1 
LNCipedia gene ID: lnc-IGSF6-1
RefSeq ID: NR_110930
Location (hg19): chr16:21601019-21610706
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1333 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499112; NONHSAT140999; NR_110930; NR_110930.1
Alternative gene names: ENSG00000245927; AC005632.1; LOC101927814


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1778 non-coding 
CPAT coding probability 4.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGSF6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGSF6-1:1
3.1 lnc-IGSF6-1:1
4.0 lnc-IGSF6-1:1
4.1 lnc-IGSF6-1:1
5.0 lnc-IGSF6-1:1
5.1 lnc-MARF1-84:1
5.2 lnc-IGSF6-1:1