Transcript: lnc-IGSF9B-1:1

Basic information

LNCipedia transcript ID: lnc-IGSF9B-1:1 
LNCipedia gene ID: lnc-IGSF9B-1
Ensembl Gene ID: ENSG00000254648
Ensembl Transcript ID: ENST00000526377
Location (hg19): chr11:133905727-133907002
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1130 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526377; ENST00000526377.1; RP11-713P17.4-001; OTTHUMT00000393297.1; NONHSAT025229
Alternative gene names: ENSG00000254648; RP11-713P17.4; ENSG00000254648.1; OTTHUMG00000167126.1; AP000911.3; AP000911.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.9719 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGSF9B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGSF9B-1:1
3.1 lnc-IGSF9B-1:1
4.0 lnc-IGSF9B-1:1
4.1 lnc-IGSF9B-1:1
5.0 lnc-IGSF9B-1:1
5.1 lnc-IGSF9B-1:1
5.2 lnc-IGSF9B-1:1